PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0041s0025.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family ERF
Protein Properties Length: 560aa    MW: 59343.2 Da    PI: 4.8721
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0041s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44e-19211261155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr++  +g+W+AeIr+p+    + +r++lg+++t+eeAa+a+++a+  ++g
  Mapoly0041s0025.1.p 211 KKFRGVRQRA-WGKWAAEIRHPK----KaTRVWLGTYDTPEEAARAYDKAAIDFRG 261
                          59*****998.**********94....45**********************98887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-31211271No hitNo description
Gene3DG3DSA:3.30.730.104.4E-32212271IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22212271IPR016177DNA-binding domain
PROSITE profilePS5103224.223212269IPR001471AP2/ERF domain
SMARTSM003801.7E-37212275IPR001471AP2/ERF domain
PfamPF008471.1E-12212261IPR001471AP2/ERF domain
PRINTSPR003673.3E-10213224IPR001471AP2/ERF domain
PRINTSPR003673.3E-10235251IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MEDSLLEDAE SAAPEAHLQQ AQQQQKGNRQ WARPAQQAPM QTLYEGCAAS MGQWNSLGDP  60
EFLNYAPTLN AVSGLETIEG VSSTMVIRAA AAAAPLPRFA GATSNLGAGD DNLSDLQTIQ  120
GFSNWSAANS GDQNRISGGG WTFGGLHQAG AAPEESTASD ARNSARRVGR ADSMSSYSSA  180
DSTSELQAPS GPGEEEKSSA VEESASAAKR KKFRGVRQRA WGKWAAEIRH PKKATRVWLG  240
TYDTPEEAAR AYDKAAIDFR GQRAKLNFPD SVGPVPGSAA AAQAANVPRR VPSLPSDARK  300
DSISSPAAPK SAAAAPPHAA TATVIAAAAA VSVPMPPQQV QQHQQQQQIV YSSQFSINTD  360
VWSRDENDMI SGGSQWPSLT LDVNCDWRGS EVPSVATSSW RTLAEEGTLE KASTSMIPVV  420
ASAAMQLTRP EWQQAAGAGG AGLAQNALDL ILAQQLQQQQ RRSVLDNPSI DSRFQNLTVH  480
VQASPLAPNQ ASDLLPAAVA AAAAADASFD LENFIEEAVQ RPLSDHIPTS QYMTAERNFS  540
SGLFWNYDQD AQHHDHPPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-19208272166ATERF1
3gcc_A4e-19208272166ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.16e-26ERF family protein